Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AJI77740.1PFAM: von Willebrand factor type A domain. (999 aa)    
Predicted Functional Partners:
AJI77746.1
Hypothetical protein.
 
     0.883
AJI77739.1
Hypothetical protein.
       0.832
AJI79210.1
PFAM: Protein of unknown function (DUF2631).
  
     0.709
AJI78160.1
Hypothetical protein.
  
     0.708
AJI78293.1
Hypothetical protein.
  
     0.699
AJI77741.1
PFAM: Tubulin like.
       0.675
AJI77742.1
Hypothetical protein.
       0.674
AJI78070.1
Hypothetical protein.
  
     0.645
AJI77872.1
PFAM: Protein of unknown function (DUF2505).
  
     0.641
AJI77894.1
Hypothetical protein.
  
     0.641
Your Current Organism:
Corynebacterium singulare
NCBI taxonomy Id: 161899
Other names: C. singulare, CCUG 37330, CIP 105491, DSM 44357, IBS B52218, IFO 16162, JCM 10385, NBRC 16162
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