Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AJI77822.1Helicase/secretion neighborhood ATPase; PFAM: Type II/IV secretion system protein; TIGRFAM: helicase/secretion neighborhood ATPase. (378 aa)    
Predicted Functional Partners:
AJI77823.1
PFAM: Type II secretion system (T2SS), protein F.
 
 
 0.994
AJI77824.1
PFAM: Type II secretion system (T2SS), protein F.
  
 
 0.993
AJI77825.1
PFAM: Protein of unknown function (DUF4244).
     
 0.835
AJI77821.1
TIGRFAM: helicase/secretion neighborhood CpaE-like protein.
       0.832
AJI77826.1
Hypothetical protein.
       0.738
AJI77827.1
PFAM: Putative Flp pilus-assembly TadE/G-like; TIGRFAM: helicase/secretion neighborhood TadE-like protein.
       0.738
AJI78472.1
SAF domain-containing protein; PFAM: SAF domain.
  
  
 0.489
AJI77816.1
PFAM: haloacid dehalogenase-like hydrolase; TIGRFAM: HAD-superfamily subfamily IB hydrolase, TIGR01490; Haloacid Dehalogenase superfamily, subfamily IB, phosphoserine phosphatase-like.
       0.435
AJI77819.1
Hypothetical protein.
       0.427
AJI77820.1
PFAM: Cation efflux family.
       0.427
Your Current Organism:
Corynebacterium singulare
NCBI taxonomy Id: 161899
Other names: C. singulare, CCUG 37330, CIP 105491, DSM 44357, IBS B52218, IFO 16162, JCM 10385, NBRC 16162
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