STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AJI77823.1PFAM: Type II secretion system (T2SS), protein F. (250 aa)    
Predicted Functional Partners:
AJI77822.1
Helicase/secretion neighborhood ATPase; PFAM: Type II/IV secretion system protein; TIGRFAM: helicase/secretion neighborhood ATPase.
 
 
 0.994
AJI77824.1
PFAM: Type II secretion system (T2SS), protein F.
 
  
  0.992
AJI77821.1
TIGRFAM: helicase/secretion neighborhood CpaE-like protein.
 
     0.888
AJI77825.1
PFAM: Protein of unknown function (DUF4244).
     
 0.798
AJI77826.1
Hypothetical protein.
       0.738
AJI77827.1
PFAM: Putative Flp pilus-assembly TadE/G-like; TIGRFAM: helicase/secretion neighborhood TadE-like protein.
       0.738
AJI78472.1
SAF domain-containing protein; PFAM: SAF domain.
 
  
 0.695
lpqB
Sporulation/spore germination protein; PFAM: Lipoprotein LpqB beta-propeller domain; Sporulation and spore germination.
  
     0.617
crgA
Uncharacterized protein family (UPF0233); Involved in cell division; Belongs to the CrgA family.
  
     0.574
AJI79346.1
Hypothetical protein.
  
     0.544
Your Current Organism:
Corynebacterium singulare
NCBI taxonomy Id: 161899
Other names: C. singulare, CCUG 37330, CIP 105491, DSM 44357, IBS B52218, IFO 16162, JCM 10385, NBRC 16162
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.