Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AJI77871.1Hypothetical protein. (266 aa)    
Predicted Functional Partners:
AJI77870.1
PFAM: Protein of unknown function (DUF2993).
       0.784
AJI77872.1
PFAM: Protein of unknown function (DUF2505).
       0.779
murB2
UDP-N-acetylmuramate dehydrogenase; Cell wall formation.
       0.650
AJI79349.1
Hypothetical protein.
  
     0.603
AJI78089.1
Hypothetical protein.
  
     0.452
AJI79113.1
PFAM: Protein of unknown function (DUF3039).
  
     0.443
AJI79734.1
Hypothetical protein.
  
     0.442
AJI79851.1
PFAM: Protein of unknown function (DUF2029).
  
     0.421
AJI77856.1
PFAM: Peptidase family M1.
  
     0.410
Your Current Organism:
Corynebacterium singulare
NCBI taxonomy Id: 161899
Other names: C. singulare, CCUG 37330, CIP 105491, DSM 44357, IBS B52218, IFO 16162, JCM 10385, NBRC 16162
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