Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AJI77985.1PFAM: Protein of unknown function (DUF3068). (318 aa)    
Predicted Functional Partners:
AJI79945.1
Hypothetical protein.
 
   
 0.796
AJI79942.1
PFAM: Domain of unknown function (DUF3367).
 
     0.781
AJI78369.1
Hypothetical protein.
  
     0.773
AJI77894.1
Hypothetical protein.
  
     0.768
AJI78412.1
PFAM: Domain of unknown function (DUF1906).
  
     0.768
AJI79885.1
Hypothetical protein.
  
     0.767
AJI79271.1
PFAM: Tryptophan-associated transmembrane protein (Trp_oprn_chp); TIGRFAM: trp region conserved hypothetical membrane protein.
  
     0.764
AJI79150.1
Hypothetical protein.
  
     0.760
AJI79499.1
Hypothetical protein.
  
     0.759
AJI78574.1
PFAM: Protein of unknown function (DUF4245).
  
     0.750
Your Current Organism:
Corynebacterium singulare
NCBI taxonomy Id: 161899
Other names: C. singulare, CCUG 37330, CIP 105491, DSM 44357, IBS B52218, IFO 16162, JCM 10385, NBRC 16162
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