STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ykoDATPase component of various ABC-type transport systems with duplicated ATPase domain; PFAM: ABC transporter. (472 aa)    
Predicted Functional Partners:
AJI77991.1
ABC-type cobalt transport system, permease component CbiQ; PFAM: Cobalt transport protein.
 
 0.995
AJI77989.1
Putative membrane protein; PFAM: ABC-type cobalt transport system, permease component.
 
  
 0.954
AJI77992.1
Adenylate kinase-like kinase; PFAM: AAA domain.
 
     0.719
bioM
ABC-type cobalt transport system, ATPase component; PFAM: ABC transporter.
 
 
0.673
irp2I
ATPase component of various ABC-type transport systems with duplicated ATPase domain; PFAM: ABC transporter.
  
  
 
0.638
irp2H
ABC-type cobalt transport system, permease component CbiQ; PFAM: Cobalt transport protein.
 
 
 0.627
dppA
ABC-type oligopeptide transport system, periplasmic component; PFAM: Bacterial extracellular solute-binding proteins, family 5 Middle.
  
  0.563
AJI78174.1
Carbohydrate ABC transporter substrate-binding protein, CUT1 family; PFAM: Bacterial extracellular solute-binding protein.
   
 
  0.544
AJI78175.1
Carbohydrate ABC transporter ATP-binding protein, CUT1 family; PFAM: ABC transporter; TOBE domain.
     
 
0.540
proX1
PFAM: Substrate binding domain of ABC-type glycine betaine transport system.
     
  0.540
Your Current Organism:
Corynebacterium singulare
NCBI taxonomy Id: 161899
Other names: C. singulare, CCUG 37330, CIP 105491, DSM 44357, IBS B52218, IFO 16162, JCM 10385, NBRC 16162
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