Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AJI78054.1PFAM: Protein of unknown function (DUF690); TIGRFAM: type VII secretion protein EccB, Actinobacterial. (428 aa)    
Predicted Functional Partners:
AJI78060.1
PFAM: Proteins of 100 residues with WXG; TIGRFAM: WXG100 family type VII secretion target; Belongs to the WXG100 family.
 
 
 0.813
AJI79958.1
PFAM: Cutinase.
 
   0.799
AJI78057.1
PFAM: FtsK/SpoIIIE family; TIGRFAM: type VII secretion protein EccCb; type VII secretion protein EccCa.
 
 
 0.786
AJI78412.1
PFAM: Domain of unknown function (DUF1906).
 
   
 0.782
aftA
PFAM: Arabinofuranosyltransferase N terminal; Arabinofuranosyltransferase A C terminal.
 
  
 0.776
AJI78369.1
Hypothetical protein.
  
   
 0.771
AJI79885.1
Hypothetical protein.
  
     0.771
AJI80011.1
Hypothetical protein.
  
     0.770
AJI78574.1
PFAM: Protein of unknown function (DUF4245).
  
     0.769
AJI78763.1
Putative membrane protein; PFAM: DoxX.
  
     0.769
Your Current Organism:
Corynebacterium singulare
NCBI taxonomy Id: 161899
Other names: C. singulare, CCUG 37330, CIP 105491, DSM 44357, IBS B52218, IFO 16162, JCM 10385, NBRC 16162
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