Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AJI78187.1Hypothetical protein. (349 aa)    
Predicted Functional Partners:
sigE1
PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; Belongs to the sigma-70 factor family. ECF subfamily.
   
   0.842
odhI
FHA domain-containing protein; PFAM: FHA domain.
   
 
 0.744
AJI78184.1
Ribonuclease HI.
  
    0.555
AJI78185.1
Hypothetical protein.
       0.550
pknB
PFAM: Protein kinase domain; PASTA domain.
  
 
 0.477
pknL
PFAM: Protein kinase domain.
  
 
 0.477
ppp
PFAM: Protein phosphatase 2C.
  
 
 0.467
AJI78183.1
Hypothetical protein.
       0.453
Your Current Organism:
Corynebacterium singulare
NCBI taxonomy Id: 161899
Other names: C. singulare, CCUG 37330, CIP 105491, DSM 44357, IBS B52218, IFO 16162, JCM 10385, NBRC 16162
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