proX1 protein (Corynebacterium singulare) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

proX1

PFAM: Substrate binding domain of ABC-type glycine betaine transport system. (208 aa)

Predicted Functional Partners:

irp2I

0.540

ykoD

0.540

AJI78174.1

0.540

AJI78175.1

0.540

AJI78944.1

0.540

bioM

0.540

mmuM

0.528

AJI78235.1

0.525

AJI78588.1

0.472

polA

0.407

Your Current Organism:

Corynebacterium singulare

NCBI taxonomy Id: 161899
Other names: C. singulare, CCUG 37330, CIP 105491, DSM 44357, IBS B52218, IFO 16162, JCM 10385, NBRC 16162

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AJI78174.1	AJI78175.1	CSING_03120	CSING_03125	Carbohydrate ABC transporter substrate-binding protein, CUT1 family; PFAM: Bacterial extracellular solute-binding protein.	Carbohydrate ABC transporter ATP-binding protein, CUT1 family; PFAM: ABC transporter; TOBE domain.	0.989
AJI78174.1	AJI78944.1	CSING_03120	CSING_07065	Carbohydrate ABC transporter substrate-binding protein, CUT1 family; PFAM: Bacterial extracellular solute-binding protein.	ATPase component of ABC-type sugar transporter; PFAM: ABC transporter; Belongs to the ABC transporter superfamily.	0.978
AJI78174.1	bioM	CSING_03120	CSING_08205	Carbohydrate ABC transporter substrate-binding protein, CUT1 family; PFAM: Bacterial extracellular solute-binding protein.	ABC-type cobalt transport system, ATPase component; PFAM: ABC transporter.	0.540
AJI78174.1	irp2I	CSING_03120	CSING_01180	Carbohydrate ABC transporter substrate-binding protein, CUT1 family; PFAM: Bacterial extracellular solute-binding protein.	ATPase component of various ABC-type transport systems with duplicated ATPase domain; PFAM: ABC transporter.	0.544
AJI78174.1	proX1	CSING_03120	CSING_03430	Carbohydrate ABC transporter substrate-binding protein, CUT1 family; PFAM: Bacterial extracellular solute-binding protein.	PFAM: Substrate binding domain of ABC-type glycine betaine transport system.	0.540
AJI78174.1	ykoD	CSING_03120	CSING_02180	Carbohydrate ABC transporter substrate-binding protein, CUT1 family; PFAM: Bacterial extracellular solute-binding protein.	ATPase component of various ABC-type transport systems with duplicated ATPase domain; PFAM: ABC transporter.	0.544
AJI78175.1	AJI78174.1	CSING_03125	CSING_03120	Carbohydrate ABC transporter ATP-binding protein, CUT1 family; PFAM: ABC transporter; TOBE domain.	Carbohydrate ABC transporter substrate-binding protein, CUT1 family; PFAM: Bacterial extracellular solute-binding protein.	0.989
AJI78175.1	AJI78588.1	CSING_03125	CSING_05245	Carbohydrate ABC transporter ATP-binding protein, CUT1 family; PFAM: ABC transporter; TOBE domain.	PFAM: ABC transporter, phosphonate, periplasmic substrate-binding protein; TIGRFAM: phosphate/phosphite/phosphonate ABC transporter, periplasmic binding protein.	0.406
AJI78175.1	AJI78944.1	CSING_03125	CSING_07065	Carbohydrate ABC transporter ATP-binding protein, CUT1 family; PFAM: ABC transporter; TOBE domain.	ATPase component of ABC-type sugar transporter; PFAM: ABC transporter; Belongs to the ABC transporter superfamily.	0.562
AJI78175.1	bioM	CSING_03125	CSING_08205	Carbohydrate ABC transporter ATP-binding protein, CUT1 family; PFAM: ABC transporter; TOBE domain.	ABC-type cobalt transport system, ATPase component; PFAM: ABC transporter.	0.540
AJI78175.1	irp2I	CSING_03125	CSING_01180	Carbohydrate ABC transporter ATP-binding protein, CUT1 family; PFAM: ABC transporter; TOBE domain.	ATPase component of various ABC-type transport systems with duplicated ATPase domain; PFAM: ABC transporter.	0.540
AJI78175.1	proX1	CSING_03125	CSING_03430	Carbohydrate ABC transporter ATP-binding protein, CUT1 family; PFAM: ABC transporter; TOBE domain.	PFAM: Substrate binding domain of ABC-type glycine betaine transport system.	0.540
AJI78175.1	ykoD	CSING_03125	CSING_02180	Carbohydrate ABC transporter ATP-binding protein, CUT1 family; PFAM: ABC transporter; TOBE domain.	ATPase component of various ABC-type transport systems with duplicated ATPase domain; PFAM: ABC transporter.	0.540
AJI78235.1	mmuM	CSING_03440	CSING_03435	PFAM: Shikimate kinase.	PFAM: Homocysteine S-methyltransferase.	0.774
AJI78235.1	proX1	CSING_03440	CSING_03430	PFAM: Shikimate kinase.	PFAM: Substrate binding domain of ABC-type glycine betaine transport system.	0.525
AJI78588.1	AJI78175.1	CSING_05245	CSING_03125	PFAM: ABC transporter, phosphonate, periplasmic substrate-binding protein; TIGRFAM: phosphate/phosphite/phosphonate ABC transporter, periplasmic binding protein.	Carbohydrate ABC transporter ATP-binding protein, CUT1 family; PFAM: ABC transporter; TOBE domain.	0.406
AJI78588.1	AJI78944.1	CSING_05245	CSING_07065	PFAM: ABC transporter, phosphonate, periplasmic substrate-binding protein; TIGRFAM: phosphate/phosphite/phosphonate ABC transporter, periplasmic binding protein.	ATPase component of ABC-type sugar transporter; PFAM: ABC transporter; Belongs to the ABC transporter superfamily.	0.406
AJI78588.1	proX1	CSING_05245	CSING_03430	PFAM: ABC transporter, phosphonate, periplasmic substrate-binding protein; TIGRFAM: phosphate/phosphite/phosphonate ABC transporter, periplasmic binding protein.	PFAM: Substrate binding domain of ABC-type glycine betaine transport system.	0.472
AJI78944.1	AJI78174.1	CSING_07065	CSING_03120	ATPase component of ABC-type sugar transporter; PFAM: ABC transporter; Belongs to the ABC transporter superfamily.	Carbohydrate ABC transporter substrate-binding protein, CUT1 family; PFAM: Bacterial extracellular solute-binding protein.	0.978
AJI78944.1	AJI78175.1	CSING_07065	CSING_03125	ATPase component of ABC-type sugar transporter; PFAM: ABC transporter; Belongs to the ABC transporter superfamily.	Carbohydrate ABC transporter ATP-binding protein, CUT1 family; PFAM: ABC transporter; TOBE domain.	0.562