Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
nifAPFAM: PucR C-terminal helix-turn-helix domain; GAF domain. (572 aa)    
Predicted Functional Partners:
ptsF
PTS system D-fructose-specific IIA component; PFAM: Phosphotransferase system, EIIC; PTS system, Lactose/Cellobiose specific IIB subunit; Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2; TIGRFAM: PTS system, fructose-specific, IIB component; PTS system, fructose subfamily, IIC component; PTS system, fructose subfamily, IIA component; F1P-forming; Frc family (TC 4.A.2.1.4);PTS system D-fructose-specific IIB component (F1P-forming), Frc family (TC 4.A.2.1.4);PTS system D-fructose-specific IIC component (F1P-forming), Frc family (TC 4.A.2.1.4).
      
 0.741
AJI78259.1
Putative membrane protein.
       0.727
adhC
Zn-dependent alcohol dehydrogenase, class III; PFAM: Alcohol dehydrogenase GroES-like domain; Zinc-binding dehydrogenase.
       0.631
AJI78261.1
Putative flavoprotein involved in K+ transport; PFAM: Pyridine nucleotide-disulphide oxidoreductase.
       0.503
lipN
Esterase/lipase; PFAM: alpha/beta hydrolase fold.
       0.498
ptsH
PFAM: PTS HPr component phosphorylation site; TIGRFAM: Phosphotransferase System HPr (HPr) Family.
    
 
 0.468
AJI78263.1
PFAM: PucR C-terminal helix-turn-helix domain; Purine catabolism regulatory protein-like family.
 
     0.434
gabT1
PFAM: Aminotransferase class-III; TIGRFAM: 4-aminobutyrate aminotransferase, prokaryotic type; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
       0.410
AJI78256.1
Hypothetical protein.
       0.408
Your Current Organism:
Corynebacterium singulare
NCBI taxonomy Id: 161899
Other names: C. singulare, CCUG 37330, CIP 105491, DSM 44357, IBS B52218, IFO 16162, JCM 10385, NBRC 16162
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