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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AJI78263.1PFAM: PucR C-terminal helix-turn-helix domain; Purine catabolism regulatory protein-like family. (510 aa)    
Predicted Functional Partners:
gabT1
PFAM: Aminotransferase class-III; TIGRFAM: 4-aminobutyrate aminotransferase, prokaryotic type; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
 
   
 0.714
uspA4
PFAM: Universal stress protein family.
 
     0.652
AJI78269.1
PFAM: Universal stress protein family.
 
     0.633
AJI78253.1
PFAM: Universal stress protein family.
 
     0.603
AJI79837.1
Transcriptional regulator; PFAM: MarR family.
  
    0.469
AJI77699.1
Sugar diacid utilization regulator; PFAM: PucR C-terminal helix-turn-helix domain.
  
     0.465
nifA
PFAM: PucR C-terminal helix-turn-helix domain; GAF domain.
 
     0.434
lipN
Esterase/lipase; PFAM: alpha/beta hydrolase fold.
       0.426
AJI78261.1
Putative flavoprotein involved in K+ transport; PFAM: Pyridine nucleotide-disulphide oxidoreductase.
       0.426
AJI79952.1
Putative integral membrane protein; PFAM: Uncharacterised protein family (UPF0104); TIGRFAM: conserved hypothetical protein.
  
     0.421
Your Current Organism:
Corynebacterium singulare
NCBI taxonomy Id: 161899
Other names: C. singulare, CCUG 37330, CIP 105491, DSM 44357, IBS B52218, IFO 16162, JCM 10385, NBRC 16162
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