STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AJI78349.1PFAM: Bacterial regulatory proteins, tetR family. (200 aa)    
Predicted Functional Partners:
AJI78348.1
Arabinose efflux permease family protein; PFAM: Major Facilitator Superfamily.
 
     0.794
AJI79399.1
Putative transcriptional regulator; PFAM: Helix-turn-helix domain.
  
    0.616
AJI78430.1
Nucleoside-diphosphate-sugar epimerase; PFAM: NADH(P)-binding.
  
     0.568
AJI79392.1
Putative transcriptional regulator.
  
    0.461
AJI78350.1
Transposase; PFAM: DDE domain.
       0.441
Your Current Organism:
Corynebacterium singulare
NCBI taxonomy Id: 161899
Other names: C. singulare, CCUG 37330, CIP 105491, DSM 44357, IBS B52218, IFO 16162, JCM 10385, NBRC 16162
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.