Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AJI78361.1PFAM: Protein of unknown function (DUF4232). (240 aa)    
Predicted Functional Partners:
AJI80015.1
PFAM: Domain of unknown function (DUF2020).
  
     0.573
AJI80010.1
PFAM: RNase_H superfamily; TIGRFAM: RecB family nuclease, putative, TM0106 family.
  
     0.552
AJI78360.1
Hypothetical protein.
       0.524
AJI79926.1
PFAM: Domain of unknown function (DUF1707).
  
     0.490
AJI79114.1
PFAM: Protein of unknown function (DUF3099).
  
     0.477
AJI79683.1
Hypothetical protein; PFAM: Peptidyl-tRNA hydrolase PTH2.
  
     0.476
AJI78907.1
Hypothetical protein.
  
     0.453
AJI79053.1
PFAM: Phosphotransferase enzyme family.
  
     0.452
yusV
ABC-type cobalamin/Fe3+-siderophore transport system, ATPase component; PFAM: ABC transporter.
       0.450
cbrA
ABC-type Fe3+-hydroxamate transport system, periplasmic component; PFAM: Periplasmic binding protein.
       0.450
Your Current Organism:
Corynebacterium singulare
NCBI taxonomy Id: 161899
Other names: C. singulare, CCUG 37330, CIP 105491, DSM 44357, IBS B52218, IFO 16162, JCM 10385, NBRC 16162
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