Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AJI78369.1Hypothetical protein. (396 aa)    
Predicted Functional Partners:
AJI79958.1
PFAM: Cutinase.
  
    0.776
AJI78412.1
PFAM: Domain of unknown function (DUF1906).
 
     0.774
AJI79271.1
PFAM: Tryptophan-associated transmembrane protein (Trp_oprn_chp); TIGRFAM: trp region conserved hypothetical membrane protein.
  
     0.774
AJI77894.1
Hypothetical protein.
  
     0.773
AJI77985.1
PFAM: Protein of unknown function (DUF3068).
  
     0.773
AJI78574.1
PFAM: Protein of unknown function (DUF4245).
  
     0.773
aftC
PFAM: Protein of unknown function (DUF2029).
  
     0.773
AJI79150.1
Hypothetical protein.
  
     0.773
aftA
PFAM: Arabinofuranosyltransferase N terminal; Arabinofuranosyltransferase A C terminal.
  
     0.772
AJI79885.1
Hypothetical protein.
  
     0.772
Your Current Organism:
Corynebacterium singulare
NCBI taxonomy Id: 161899
Other names: C. singulare, CCUG 37330, CIP 105491, DSM 44357, IBS B52218, IFO 16162, JCM 10385, NBRC 16162
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