STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AJI78394.1PFAM: Helicase conserved C-terminal domain. (700 aa)    
Predicted Functional Partners:
AJI78393.1
DNA/RNA helicase, superfamily II; PFAM: Helicase conserved C-terminal domain; Type III restriction enzyme, res subunit.
 
     0.941
dapC1
Succinyldiaminopimelate aminotransferase apoenzyme; PFAM: Aminotransferase class I and II.
       0.768
AJI78392.1
PFAM: Protein of unknown function (DUF3239).
       0.768
AJI78395.1
Hypothetical protein.
       0.682
AJI79728.1
Protein of unknown function (DUF1794); May play a role in the intracellular transport of hydrophobic ligands.
  
     0.616
AJI77814.1
PFAM: Protein of unknown function (DUF1469).
  
     0.611
AJI78308.1
Hypothetical protein.
  
     0.591
AJI78324.1
DNA/RNA helicase, superfamily I; PFAM: UvrD-like helicase C-terminal domain; PD-(D/E)XK nuclease superfamily; UvrD/REP helicase N-terminal domain; Belongs to the helicase family. UvrD subfamily.
 
   
 0.572
dop
PFAM: Pup-ligase protein; TIGRFAM: proteasome accessory factor PafA2.
     
 0.569
AJI78899.1
PFAM: Protein of unknown function (DUF3097).
  
    0.542
Your Current Organism:
Corynebacterium singulare
NCBI taxonomy Id: 161899
Other names: C. singulare, CCUG 37330, CIP 105491, DSM 44357, IBS B52218, IFO 16162, JCM 10385, NBRC 16162
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