STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AJI78399.1PFAM: Glutamine cyclotransferase. (293 aa)    
Predicted Functional Partners:
AJI78398.1
PFAM: Protein of unknown function (DUF2771).
       0.824
AJI78400.1
PFAM: Protein of unknown function (DUF3027).
       0.690
AJI78401.1
PFAM: Permease family.
       0.560
AJI78402.1
PFAM: SpoU rRNA Methylase family.
       0.522
dinF
PFAM: MatE; TIGRFAM: putative efflux protein, MATE family.
  
     0.413
dprE1
decaprenylphospho-beta-D-ribofuranose 2-oxidase; PFAM: D-arabinono-1,4-lactone oxidase; FAD binding domain.
    
   0.406
AJI78037.1
FAD/FMN-dependent dehydrogenase; PFAM: FAD binding domain.
    
   0.406
AJI78594.1
FAD-linked oxidoreductase; PFAM: D-arabinono-1,4-lactone oxidase; FAD binding domain; TIGRFAM: FAD-linked oxidoreductase.
    
   0.406
AJI78943.1
FAD/FMN-dependent dehydrogenase; PFAM: Cysteine-rich domain; 4Fe-4S dicluster domain; FAD binding domain; FAD linked oxidases, C-terminal domain.
    
   0.406
Your Current Organism:
Corynebacterium singulare
NCBI taxonomy Id: 161899
Other names: C. singulare, CCUG 37330, CIP 105491, DSM 44357, IBS B52218, IFO 16162, JCM 10385, NBRC 16162
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