Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AJI78400.1PFAM: Protein of unknown function (DUF3027). (225 aa)    
Predicted Functional Partners:
AJI79105.1
PFAM: Domain of unknown function (DUF4193).
  
     0.714
AJI79439.1
PFAM: Protein of unknown function (DUF3052).
  
     0.707
AJI78399.1
PFAM: Glutamine cyclotransferase.
       0.690
AJI78398.1
PFAM: Protein of unknown function (DUF2771).
       0.686
whiA
Hypothetical protein; Involved in cell division and chromosome segregation.
  
     0.651
AJI78401.1
PFAM: Permease family.
       0.640
rbpA
Protein of unknown function (DUF4109); Binds to RNA polymerase (RNAP), stimulating transcription from principal, but not alternative sigma factor promoters. Belongs to the RNA polymerase-binding protein RbpA family.
  
     0.627
AJI78402.1
PFAM: SpoU rRNA Methylase family.
       0.585
AJI79147.1
PFAM: Domain of Unknown Function (DUF349).
  
     0.545
AJI77922.1
Fructose-2,6-bisphosphatase; PFAM: Histidine phosphatase superfamily (branch 1).
  
     0.541
Your Current Organism:
Corynebacterium singulare
NCBI taxonomy Id: 161899
Other names: C. singulare, CCUG 37330, CIP 105491, DSM 44357, IBS B52218, IFO 16162, JCM 10385, NBRC 16162
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