STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pknJPFAM: Protein kinase domain. (425 aa)    
Predicted Functional Partners:
ppp
PFAM: Protein phosphatase 2C.
 
 
 0.829
AJI78456.1
Hypothetical protein.
   
   0.617
odhI
FHA domain-containing protein; PFAM: FHA domain.
 
 
 
 0.606
AJI77606.1
PFAM: Protein of unknown function (DUF2662); FHA domain.
 
 
 
 0.549
AJI78454.1
Hypothetical protein.
       0.546
pknG
PFAM: Protein kinase domain.
  
   
0.467
pknB
PFAM: Protein kinase domain; PASTA domain.
 
 
0.413
AJI77605.1
FHA domain-containing protein; PFAM: FHA domain.
 
 
   0.411
pknL
PFAM: Protein kinase domain.
 
 
0.403
Your Current Organism:
Corynebacterium singulare
NCBI taxonomy Id: 161899
Other names: C. singulare, CCUG 37330, CIP 105491, DSM 44357, IBS B52218, IFO 16162, JCM 10385, NBRC 16162
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.