Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AJI78492.1Hypothetical protein; PFAM: Transglycosylase-like domain; Domain of unknown function (DUF348); G5 domain. (382 aa)    
Predicted Functional Partners:
rsmA
Dimethyladenosine transferase; Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits.
  
  
 0.944
ispE
4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol.
     
 0.813
AJI78491.1
Hydrolase, TatD family; PFAM: TatD related DNase; TIGRFAM: hydrolase, TatD family.
     
 0.750
AJI78495.1
ATPase component of ABC transporters with duplicated ATPase domain; PFAM: ABC transporter.
     
 0.716
AJI78896.1
Cell wall-associated hydrolase, invasion-associated protein; PFAM: NlpC/P60 family.
  
  
 0.547
AJI78278.1
TIGRFAM: TIGR03089 family protein.
  
     0.538
cwlM
N-acetylmuramoyl-L-alanine amidase; PFAM: Putative peptidoglycan binding domain; N-acetylmuramoyl-L-alanine amidase.
  
   
 0.535
AJI79357.1
PFAM: NlpC/P60 family.
  
  
 0.468
ctaC
Heme/copper-type cytochrome/quinol oxidase subunit 2; PFAM: Cytochrome C oxidase subunit II, periplasmic domain.
      
 0.467
AJI79617.1
Hypothetical protein.
  
     0.412
Your Current Organism:
Corynebacterium singulare
NCBI taxonomy Id: 161899
Other names: C. singulare, CCUG 37330, CIP 105491, DSM 44357, IBS B52218, IFO 16162, JCM 10385, NBRC 16162
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