STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AJI78668.1Hypothetical protein; PFAM: SWIM zinc finger. (274 aa)    
Predicted Functional Partners:
helZ
DNA/RNA helicase, superfamily II, SNF2 family; PFAM: SNF2 Helicase protein; Helicase conserved C-terminal domain; SNF2 family N-terminal domain.
 
    0.959
AJI78669.1
DNA repair exonuclease; PFAM: Calcineurin-like phosphoesterase.
       0.744
AJI78670.1
PFAM: AAA domain.
       0.744
AJI78671.1
Transcriptional regulator; PFAM: MarR family.
       0.708
putP1
Sodium/proline symporter; Catalyzes the sodium-dependent uptake of extracellular L- proline; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.
       0.634
AJI79305.1
Hypothetical protein.
  
     0.594
AJI78664.1
Hypothetical protein.
 
     0.585
AJI78672.1
Hypothetical protein.
       0.529
AJI78665.1
PFAM: Protein of unknown function (DUF1524).
       0.516
AJI80071.1
PFAM: Predicted membrane protein (DUF2339).
  
     0.451
Your Current Organism:
Corynebacterium singulare
NCBI taxonomy Id: 161899
Other names: C. singulare, CCUG 37330, CIP 105491, DSM 44357, IBS B52218, IFO 16162, JCM 10385, NBRC 16162
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.