Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
AJI78687.1PFAM: Uncharacterized conserved protein (DUF2249). (86 aa)    
Predicted Functional Partners:
AJI78689.1
PFAM: Multicopper oxidase.
 
     0.910
AJI78688.1
Hypothetical protein.
 
     0.899
AJI78684.1
Transcriptional regulator; PFAM: IclR helix-turn-helix domain.
 
     0.879
molA
PFAM: Bacterial extracellular solute-binding protein; TIGRFAM: molybdenum ABC transporter, periplasmic molybdate-binding protein.
       0.824
molB
ABC-type sulfate transport system, permease component; PFAM: ABC transporter; Binding-protein-dependent transport system inner membrane component.
       0.762
AJI80009.1
Hypothetical protein.
 
     0.736
AJI79284.1
Putative molybdopterin-dependent oxidoreductase; PFAM: Prokaryotic cytochrome b561; Oxidoreductase molybdopterin binding domain.
  
     0.511
Your Current Organism:
Corynebacterium singulare
NCBI taxonomy Id: 161899
Other names: C. singulare, CCUG 37330, CIP 105491, DSM 44357, IBS B52218, IFO 16162, JCM 10385, NBRC 16162
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