Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
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Co-expression
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[Homology]
Score
AJI78733.1PFAM: Methyltransferase domain. (277 aa)    
Predicted Functional Partners:
AJI78735.1
Hypothetical protein.
 
   
 0.719
mnmA
tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase; Catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34.
       0.674
AJI79794.1
Hypothetical protein.
  
     0.507
AJI78112.1
Putative membrane protein; PFAM: Bacterial PH domain.
  
     0.491
AJI77876.1
Putative membrane protein; PFAM: Virulence factor BrkB; TIGRFAM: YihY family inner membrane protein.
  
     0.480
hutG
Formiminoglutamase; Catalyzes the conversion of N-formimidoyl-L-glutamate to L- glutamate and formamide; Belongs to the arginase family.
  
  
 0.475
AJI79741.1
Tellurite resistance protein-like permease; PFAM: Voltage-dependent anion channel.
 
     0.474
AJI79409.1
Tellurite resistance protein-like permease; PFAM: Voltage-dependent anion channel.
 
     0.470
AJI79023.1
PFAM: Part of AAA domain; Viral (Superfamily 1) RNA helicase.
 
     0.462
putA
PFAM: Proline dehydrogenase; Aldehyde dehydrogenase family; Belongs to the aldehyde dehydrogenase family.
 
 
 0.461
Your Current Organism:
Corynebacterium singulare
NCBI taxonomy Id: 161899
Other names: C. singulare, CCUG 37330, CIP 105491, DSM 44357, IBS B52218, IFO 16162, JCM 10385, NBRC 16162
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