STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lysGTranscriptional regulator, ArgP family; PFAM: LysR substrate binding domain; Bacterial regulatory helix-turn-helix protein, lysR family; TIGRFAM: transcriptional regulator, ArgP family. (294 aa)    
Predicted Functional Partners:
lysE
Lysine efflux permease; PFAM: LysE type translocator; TIGRFAM: L-lysine exporter.
 
   
 0.971
AJI78763.1
Putative membrane protein; PFAM: DoxX.
       0.766
lytR1
Transcriptional attenuator, LytR family; PFAM: Cell envelope-related transcriptional attenuator domain; TIGRFAM: cell envelope-related function transcriptional attenuator common domain.
   
    0.665
sufR
Transcriptional regulator; PFAM: Helix-turn-helix domain.
   
    0.629
kdpE
PFAM: Response regulator receiver domain; Transcriptional regulatory protein, C terminal.
   
    0.585
cobB1
NAD-dependent protein deacetylase, SIR2 family; PFAM: Sir2 family.
   
    0.545
cobB
NAD-dependent protein deacetylase, SIR2 family; PFAM: Sir2 family; Belongs to the sirtuin family. Class III subfamily.
   
    0.545
AJI78684.1
Transcriptional regulator; PFAM: IclR helix-turn-helix domain.
   
    0.508
AJI78765.1
PFAM: Winged helix DNA-binding domain.
  
    0.481
AJI78764.1
Hypothetical protein.
       0.480
Your Current Organism:
Corynebacterium singulare
NCBI taxonomy Id: 161899
Other names: C. singulare, CCUG 37330, CIP 105491, DSM 44357, IBS B52218, IFO 16162, JCM 10385, NBRC 16162
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.