Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
AJI78781.1Hypothetical protein; TIGRFAM: actinobacterial surface-anchored protein domain. (442 aa)    
Predicted Functional Partners:
AJI78783.1
PFAM: ABC transporter; TIGRFAM: anchored repeat-type ABC transporter, ATP-binding subunit.
 
  
 0.940
sapD
TIGRFAM: actinobacterial surface-anchored protein domain.
 
    0.938
AJI78785.1
Anchored repeat ABC transporter, substrate-binding protein; PFAM: Periplasmic solute binding protein family; TIGRFAM: actinobacterial surface-anchored protein domain; anchored repeat ABC transporter, substrate-binding protein; Belongs to the bacterial solute-binding protein 9 family.
 
     0.934
AJI78782.1
PFAM: ABC 3 transport family; TIGRFAM: anchored repeat-type ABC transporter, permease subunit.
 
    0.928
AJI78784.1
TIGRFAM: actinobacterial surface-anchored protein domain.
 
    
0.838
AJI78787.1
TIGRFAM: actinobacterial surface-anchored protein domain.
 
    
0.793
menF
Isochorismate synthase; PFAM: chorismate binding enzyme; TIGRFAM: isochorismate synthases.
  
    0.579
gltX
glutamyl-tRNA synthetase; Catalyzes the attachment of glutamate to tRNA(Glu) in a two- step reaction: glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu); Belongs to the class-I aminoacyl-tRNA synthetase family. Glutamate--tRNA ligase type 1 subfamily.
       0.513
mntB
ATPase component of Mn/Zn ABC-type transporter; PFAM: ABC transporter.
 
    0.477
AJI78812.1
Hypothetical protein.
 
    0.416
Your Current Organism:
Corynebacterium singulare
NCBI taxonomy Id: 161899
Other names: C. singulare, CCUG 37330, CIP 105491, DSM 44357, IBS B52218, IFO 16162, JCM 10385, NBRC 16162
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