STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sapDTIGRFAM: actinobacterial surface-anchored protein domain. (354 aa)    
Predicted Functional Partners:
AJI78781.1
Hypothetical protein; TIGRFAM: actinobacterial surface-anchored protein domain.
 
  
 0.940
AJI78783.1
PFAM: ABC transporter; TIGRFAM: anchored repeat-type ABC transporter, ATP-binding subunit.
 
    0.893
AJI78782.1
PFAM: ABC 3 transport family; TIGRFAM: anchored repeat-type ABC transporter, permease subunit.
 
     0.886
AJI78785.1
Anchored repeat ABC transporter, substrate-binding protein; PFAM: Periplasmic solute binding protein family; TIGRFAM: actinobacterial surface-anchored protein domain; anchored repeat ABC transporter, substrate-binding protein; Belongs to the bacterial solute-binding protein 9 family.
 
  
0.879
AJI78787.1
TIGRFAM: actinobacterial surface-anchored protein domain.
 
    
0.864
AJI78784.1
TIGRFAM: actinobacterial surface-anchored protein domain.
 
  
0.855
gltX
glutamyl-tRNA synthetase; Catalyzes the attachment of glutamate to tRNA(Glu) in a two- step reaction: glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu); Belongs to the class-I aminoacyl-tRNA synthetase family. Glutamate--tRNA ligase type 1 subfamily.
       0.591
menF
Isochorismate synthase; PFAM: chorismate binding enzyme; TIGRFAM: isochorismate synthases.
  
    0.589
rpmF
PFAM: Ribosomal L32p protein family; TIGRFAM: ribosomal protein L32; Belongs to the bacterial ribosomal protein bL32 family.
  
  
 0.494
AJI79357.1
PFAM: NlpC/P60 family.
  
  
 0.408
Your Current Organism:
Corynebacterium singulare
NCBI taxonomy Id: 161899
Other names: C. singulare, CCUG 37330, CIP 105491, DSM 44357, IBS B52218, IFO 16162, JCM 10385, NBRC 16162
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.