Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AJI78938.1Hypothetical protein; PFAM: YceI-like domain; Belongs to the UPF0312 family. (232 aa)    
Predicted Functional Partners:
AJI78937.1
Hypothetical protein.
       0.832
AJI78939.1
Hypothetical protein.
       0.773
rbpA
Protein of unknown function (DUF4109); Binds to RNA polymerase (RNAP), stimulating transcription from principal, but not alternative sigma factor promoters. Belongs to the RNA polymerase-binding protein RbpA family.
       0.664
AJI78700.1
Hypothetical protein.
  
     0.592
AJI78900.1
Hypothetical protein.
  
     0.524
AJI77657.1
Putative membrane protein; PFAM: Protease prsW family.
  
     0.469
AJI78103.1
Hypothetical protein.
  
     0.448
AJI78020.1
PFAM: Domain of unknown function (DUF4095); Protein of unknown function (DUF559).
  
     0.423
AJI77897.1
PFAM: HNH endonuclease.
  
   0.422
AJI78596.1
PFAM: HNH endonuclease.
  
   0.406
Your Current Organism:
Corynebacterium singulare
NCBI taxonomy Id: 161899
Other names: C. singulare, CCUG 37330, CIP 105491, DSM 44357, IBS B52218, IFO 16162, JCM 10385, NBRC 16162
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