Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
AJI78976.1PFAM: ABC-2 type transporter. (265 aa)    
Predicted Functional Partners:
AJI78975.1
ABC-type multidrug transport system, ATPase component; PFAM: ABC transporter.
 
    0.963
tcsS2
PFAM: Histidine kinase; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.
 
    0.925
tcsR2
Two component transcriptional regulator, LuxR family; PFAM: Response regulator receiver domain; Bacterial regulatory proteins, luxR family.
 
     0.880
AJI78974.1
Methyltransferase family protein; PFAM: Methyltransferase domain.
       0.531
AJI78873.1
PFAM: ABC-2 family transporter protein; TIGRFAM: ABC transporter efflux protein, DrrB family.
  
  
  0.513
AJI77790.1
ABC-type multidrug transport system, permease component; PFAM: ABC-2 type transporter.
  
  
  0.500
AJI77841.1
PFAM: Histidine kinase.
 
    0.466
AJI77973.1
ABC-type multidrug transport system, permease component; PFAM: ABC-2 type transporter; TIGRFAM: ABC transporter efflux protein, DrrB family.
  
  
  0.445
AJI79078.1
PFAM: Nitroreductase family.
  
    0.442
Your Current Organism:
Corynebacterium singulare
NCBI taxonomy Id: 161899
Other names: C. singulare, CCUG 37330, CIP 105491, DSM 44357, IBS B52218, IFO 16162, JCM 10385, NBRC 16162
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