Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
AJI79000.1Hypothetical protein. (197 aa)    
Predicted Functional Partners:
AJI78999.1
PFAM: Trm112p-like protein; Belongs to the UPF0434 family.
       0.824
AJI79001.1
PFAM: von Willebrand factor type A domain; Bacterial extracellular solute-binding protein.
       0.759
tyrS
tyrosyl-tRNA synthetase; Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two- step reaction: tyrosine is first activated by ATP to form Tyr-AMP and then transferred to the acceptor end of tRNA(Tyr); Belongs to the class-I aminoacyl-tRNA synthetase family. TyrS type 1 subfamily.
       0.729
AJI79002.1
Hypothetical protein.
       0.691
AJI79162.1
Phage shock protein A (PspA) family protein; PFAM: PspA/IM30 family.
  
 
 0.623
AJI80028.1
Phage shock protein A (PspA) family protein; PFAM: PspA/IM30 family.
  
 
 0.623
AJI77695.1
PFAM: Membrane protein of unknown function.
  
    0.577
argH
PFAM: Lyase; Argininosuccinate lyase C-terminal; TIGRFAM: argininosuccinate lyase.
       0.513
argG
PFAM: Arginosuccinate synthase; TIGRFAM: argininosuccinate synthase; Belongs to the argininosuccinate synthase family. Type 1 subfamily.
       0.510
argR
Transcriptional regulator, ArgR family; Regulates arginine biosynthesis genes.
       0.469
Your Current Organism:
Corynebacterium singulare
NCBI taxonomy Id: 161899
Other names: C. singulare, CCUG 37330, CIP 105491, DSM 44357, IBS B52218, IFO 16162, JCM 10385, NBRC 16162
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