Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AJI79108.1PFAM: Transposase DDE domain. (534 aa)    
Predicted Functional Partners:
AJI77701.1
DNA replication protein; PFAM: IstB-like ATP binding protein.
  
     0.534
AJI78426.1
DNA replication protein; PFAM: IstB-like ATP binding protein.
  
     0.534
AJI77641.1
Putative ATPase (AAA+ superfamily); PFAM: AAA domain; Domain of unknown function (DUF4143).
  
     0.501
AJI78209.1
Putative ATPase (AAA+ superfamily); PFAM: AAA domain; Domain of unknown function (DUF4143).
  
     0.476
AJI77700.1
Transposase; PFAM: Integrase core domain.
  
     0.474
AJI78425.1
Transposase; PFAM: Integrase core domain.
  
     0.474
AJI78747.1
Putative ATPase (AAA+ superfamily); PFAM: AAA domain; Domain of unknown function (DUF4143).
  
     0.468
AJI80086.1
Putative transcriptional regulator with HTH domain; PFAM: Divergent AAA domain; ATP-dependent DNA helicase recG C-terminal.
  
     0.420
Your Current Organism:
Corynebacterium singulare
NCBI taxonomy Id: 161899
Other names: C. singulare, CCUG 37330, CIP 105491, DSM 44357, IBS B52218, IFO 16162, JCM 10385, NBRC 16162
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