STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
bioMABC-type cobalt transport system, ATPase component; PFAM: ABC transporter. (230 aa)    
Predicted Functional Partners:
bioN
ABC-type cobalt transport system, permease component CbiQ; PFAM: Cobalt transport protein.
 
 0.999
AJI79159.1
Hypothetical protein; PFAM: BioY family.
 
 
 0.998
AJI77991.1
ABC-type cobalt transport system, permease component CbiQ; PFAM: Cobalt transport protein.
 
 
 0.855
irp2H
ABC-type cobalt transport system, permease component CbiQ; PFAM: Cobalt transport protein.
  
 
 0.830
ykoD
ATPase component of various ABC-type transport systems with duplicated ATPase domain; PFAM: ABC transporter.
 
 
0.673
AJI77913.1
PFAM: ABC transporter.
  
     0.663
irp2I
ATPase component of various ABC-type transport systems with duplicated ATPase domain; PFAM: ABC transporter.
 
 
0.659
recA
RecA protein; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family.
     
 0.646
AJI78944.1
ATPase component of ABC-type sugar transporter; PFAM: ABC transporter; Belongs to the ABC transporter superfamily.
  
  
 
0.558
AJI79158.1
Hypothetical protein.
       0.542
Your Current Organism:
Corynebacterium singulare
NCBI taxonomy Id: 161899
Other names: C. singulare, CCUG 37330, CIP 105491, DSM 44357, IBS B52218, IFO 16162, JCM 10385, NBRC 16162
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