Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AJI79162.1Phage shock protein A (PspA) family protein; PFAM: PspA/IM30 family. (278 aa)    
Predicted Functional Partners:
AJI79163.1
Putative transcriptional regulator; PFAM: Helix-turn-helix domain.
  
  
 0.782
AJI79352.1
Hypothetical protein; Exonuclease that cleaves single-stranded 3' overhangs of double-stranded RNA.
  
     0.774
AJI78856.1
PFAM: Bacterial PH domain.
  
     0.771
csm
PFAM: Chorismate mutase type II; TIGRFAM: monofunctional chorismate mutase, high GC gram positive type.
  
     0.770
AJI78145.1
Hypothetical protein.
  
     0.761
AJI79317.1
Hypothetical protein.
  
     0.761
AJI79262.1
Cell division initiation protein.
  
     0.754
divIVA
PFAM: DivIVA protein; TIGRFAM: DivIVA domain.
  
     0.745
AJI78937.1
Hypothetical protein.
  
     0.741
AJI78323.1
TIGRFAM: TIGR02569 family protein.
  
     0.733
Your Current Organism:
Corynebacterium singulare
NCBI taxonomy Id: 161899
Other names: C. singulare, CCUG 37330, CIP 105491, DSM 44357, IBS B52218, IFO 16162, JCM 10385, NBRC 16162
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