STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
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Coexpression
Experiments
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[Homology]
Score
AJI79163.1Putative transcriptional regulator; PFAM: Helix-turn-helix domain. (116 aa)    
Predicted Functional Partners:
AJI79162.1
Phage shock protein A (PspA) family protein; PFAM: PspA/IM30 family.
  
  
 0.782
cinA
PFAM: Competence-damaged protein; TIGRFAM: amidohydrolase, PncC family; Belongs to the CinA family.
     
 0.755
pgsA2
PFAM: CDP-alcohol phosphatidyltransferase; TIGRFAM: CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.
       0.733
AJI79105.1
PFAM: Domain of unknown function (DUF4193).
  
     0.691
AJI78331.1
Putative hydrolase; PFAM: Uncharacterised conserved protein (DUF2342); TIGRFAM: putative hydrolase.
  
     0.678
rbpA
Protein of unknown function (DUF4109); Binds to RNA polymerase (RNAP), stimulating transcription from principal, but not alternative sigma factor promoters. Belongs to the RNA polymerase-binding protein RbpA family.
  
    0.616
AJI79166.1
Hypothetical protein; PFAM: YCII-related domain.
  
    0.613
AJI78960.1
PFAM: MerR HTH family regulatory protein.
  
    0.607
xseB
Exodeoxyribonuclease VII small subunit; Bidirectionally degrades single-stranded DNA into large acid- insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides; Belongs to the XseB family.
  
    0.589
AJI79225.1
PFAM: Protein of unknown function (DUF2469).
  
     0.575
Your Current Organism:
Corynebacterium singulare
NCBI taxonomy Id: 161899
Other names: C. singulare, CCUG 37330, CIP 105491, DSM 44357, IBS B52218, IFO 16162, JCM 10385, NBRC 16162
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.