Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AJI79211.1Hypothetical protein. (528 aa)    
Predicted Functional Partners:
AJI79212.1
ABC-type multidrug transport system, ATPase component; PFAM: ABC transporter.
 
     0.939
rlmN
23S rRNA m(2)A-2503 methyltransferase; Specifically methylates position 2 of adenine 2503 in 23S rRNA and position 2 of adenine 37 in tRNAs; Belongs to the radical SAM superfamily. RlmN family.
       0.687
AJI79214.1
Uncharacterized integral membrane protein; PFAM: Protein of unknown function (DUF1049).
 
     0.648
AJI78563.1
LysR family regulator; PFAM: LysR substrate binding domain.
  
     0.568
AJI78817.1
Hypothetical protein.
  
     0.534
AJI79210.1
PFAM: Protein of unknown function (DUF2631).
  
     0.525
tetA1
ABC-type multidrug transport system, ATPase and permease component; PFAM: ABC transporter; ABC transporter transmembrane region.
  
     0.507
AJI79880.1
Putative membrane protein; PFAM: Fusaric acid resistance protein-like.
  
     0.492
AJI78900.1
Hypothetical protein.
  
     0.480
AJI77657.1
Putative membrane protein; PFAM: Protease prsW family.
  
     0.469
Your Current Organism:
Corynebacterium singulare
NCBI taxonomy Id: 161899
Other names: C. singulare, CCUG 37330, CIP 105491, DSM 44357, IBS B52218, IFO 16162, JCM 10385, NBRC 16162
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