rnc protein (Corynebacterium singulare) - STRING interaction network

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rnc

Ribonuclease III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism. (256 aa)

Predicted Functional Partners:

AJI79260.1

0.922

rplS

0.895

rpsO

0.885

rpmF

0.879

rplQ

0.876

rpmA

0.874

rpsI

0.872

rplO

0.871

prfB

0.866

rplT

0.863

Your Current Organism:

Corynebacterium singulare

NCBI taxonomy Id: 161899
Other names: C. singulare, CCUG 37330, CIP 105491, DSM 44357, IBS B52218, IFO 16162, JCM 10385, NBRC 16162

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AJI79260.1	rnc	CSING_08705	CSING_08700	Putative metal-binding protein, possibly nucleic-acid binding; PFAM: Uncharacterized ACR, COG1399.	Ribonuclease III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.	0.922
AJI79260.1	rplO	CSING_08705	CSING_02405	Putative metal-binding protein, possibly nucleic-acid binding; PFAM: Uncharacterized ACR, COG1399.	Ribosomal protein L15, bacterial/organelle; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family.	0.564
AJI79260.1	rplS	CSING_08705	CSING_08550	Putative metal-binding protein, possibly nucleic-acid binding; PFAM: Uncharacterized ACR, COG1399.	LSU ribosomal protein L19P; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.	0.635
AJI79260.1	rplT	CSING_08705	CSING_07445	Putative metal-binding protein, possibly nucleic-acid binding; PFAM: Uncharacterized ACR, COG1399.	Ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.	0.595
AJI79260.1	rpmA	CSING_08705	CSING_10360	Putative metal-binding protein, possibly nucleic-acid binding; PFAM: Uncharacterized ACR, COG1399.	PFAM: Ribosomal L27 protein; TIGRFAM: ribosomal protein L27; Belongs to the bacterial ribosomal protein bL27 family.	0.755
AJI79260.1	rpmF	CSING_08705	CSING_04615	Putative metal-binding protein, possibly nucleic-acid binding; PFAM: Uncharacterized ACR, COG1399.	PFAM: Ribosomal L32p protein family; TIGRFAM: ribosomal protein L32; Belongs to the bacterial ribosomal protein bL32 family.	0.869
AJI79260.1	rpsI	CSING_08705	CSING_02560	Putative metal-binding protein, possibly nucleic-acid binding; PFAM: Uncharacterized ACR, COG1399.	PFAM: Ribosomal protein S9/S16; Belongs to the universal ribosomal protein uS9 family.	0.543
AJI79260.1	rpsO	CSING_08705	CSING_08295	Putative metal-binding protein, possibly nucleic-acid binding; PFAM: Uncharacterized ACR, COG1399.	SSU ribosomal protein S15P; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome.	0.655
prfB	rnc	CSING_04130	CSING_08700	Bacterial peptide chain release factor 2 (bRF-2); Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA.	Ribonuclease III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.	0.866
prfB	rplO	CSING_04130	CSING_02405	Bacterial peptide chain release factor 2 (bRF-2); Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA.	Ribosomal protein L15, bacterial/organelle; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family.	0.899
prfB	rplQ	CSING_04130	CSING_02470	Bacterial peptide chain release factor 2 (bRF-2); Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA.	PFAM: Ribosomal protein L17; TIGRFAM: ribosomal protein L17.	0.917
prfB	rplS	CSING_04130	CSING_08550	Bacterial peptide chain release factor 2 (bRF-2); Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA.	LSU ribosomal protein L19P; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.	0.909
prfB	rplT	CSING_04130	CSING_07445	Bacterial peptide chain release factor 2 (bRF-2); Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA.	Ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.	0.943
prfB	rpmA	CSING_04130	CSING_10360	Bacterial peptide chain release factor 2 (bRF-2); Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA.	PFAM: Ribosomal L27 protein; TIGRFAM: ribosomal protein L27; Belongs to the bacterial ribosomal protein bL27 family.	0.927
prfB	rpmF	CSING_04130	CSING_04615	Bacterial peptide chain release factor 2 (bRF-2); Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA.	PFAM: Ribosomal L32p protein family; TIGRFAM: ribosomal protein L32; Belongs to the bacterial ribosomal protein bL32 family.	0.907
prfB	rpsI	CSING_04130	CSING_02560	Bacterial peptide chain release factor 2 (bRF-2); Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA.	PFAM: Ribosomal protein S9/S16; Belongs to the universal ribosomal protein uS9 family.	0.853
prfB	rpsO	CSING_04130	CSING_08295	Bacterial peptide chain release factor 2 (bRF-2); Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA.	SSU ribosomal protein S15P; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome.	0.887
rnc	AJI79260.1	CSING_08700	CSING_08705	Ribonuclease III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.	Putative metal-binding protein, possibly nucleic-acid binding; PFAM: Uncharacterized ACR, COG1399.	0.922
rnc	prfB	CSING_08700	CSING_04130	Ribonuclease III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.	Bacterial peptide chain release factor 2 (bRF-2); Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA.	0.866
rnc	rplO	CSING_08700	CSING_02405	Ribonuclease III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.	Ribosomal protein L15, bacterial/organelle; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family.	0.871

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