Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
Experiments
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[Homology]
Score
AJI79291.1Hypothetical protein; PFAM: Region found in RelA / SpoT proteins. (332 aa)    
Predicted Functional Partners:
AJI79290.1
Hypothetical protein.
       0.717
rnhB
RNase HII; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids.
     
 0.704
AJI79289.1
DNA polymerase III epsilon subunit-like 3'-5' exonuclease; PFAM: Exonuclease.
 
     0.661
relA
(p)ppGpp synthetase, RelA/SpoT family; In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance.
    
 0.602
glgX
Isoamylase; PFAM: Alpha amylase, catalytic domain; Carbohydrate-binding module 48 (Isoamylase N-terminal domain); TIGRFAM: glycogen debranching enzyme GlgX; Belongs to the glycosyl hydrolase 13 family.
       0.533
AJI78278.1
TIGRFAM: TIGR03089 family protein.
  
     0.515
AJI79287.1
PFAM: Bacterial regulatory proteins, tetR family.
       0.501
ndk
Nucleoside diphosphate kinase; Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate; Belongs to the NDK family.
     
  0.500
AJI78596.1
PFAM: HNH endonuclease.
  
     0.486
cfa
Methyltransferase, cyclopropane fatty acid synthase; PFAM: Mycolic acid cyclopropane synthetase.
  
     0.449
Your Current Organism:
Corynebacterium singulare
NCBI taxonomy Id: 161899
Other names: C. singulare, CCUG 37330, CIP 105491, DSM 44357, IBS B52218, IFO 16162, JCM 10385, NBRC 16162
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