Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AJI79344.1PFAM: Protein of unknown function (DUF3040). (132 aa)    
Predicted Functional Partners:
AJI79346.1
Hypothetical protein.
 
     0.751
AJI79645.1
Hypothetical protein; PFAM: L,D-transpeptidase catalytic domain.
  
     0.637
AJI79345.1
Hypothetical protein.
       0.635
AJI79728.1
Protein of unknown function (DUF1794); May play a role in the intracellular transport of hydrophobic ligands.
  
     0.586
mptA
TIGRFAM: carotene biosynthesis associated membrane protein.
 
     0.575
AJI79097.1
PFAM: Protein of unknown function (DUF3000).
  
     0.544
AJI78308.1
Hypothetical protein.
  
     0.528
AJI79347.1
Geranylgeranyl pyrophosphate synthase; PFAM: Polyprenyl synthetase; Belongs to the FPP/GGPP synthase family.
       0.517
divIVA
PFAM: DivIVA protein; TIGRFAM: DivIVA domain.
  
     0.512
AJI79890.1
PFAM: Oxidoreductase FAD-binding domain.
  
     0.428
Your Current Organism:
Corynebacterium singulare
NCBI taxonomy Id: 161899
Other names: C. singulare, CCUG 37330, CIP 105491, DSM 44357, IBS B52218, IFO 16162, JCM 10385, NBRC 16162
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