STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
mptATIGRFAM: carotene biosynthesis associated membrane protein. (507 aa)    
Predicted Functional Partners:
AJI79347.1
Geranylgeranyl pyrophosphate synthase; PFAM: Polyprenyl synthetase; Belongs to the FPP/GGPP synthase family.
   
 
 0.843
AJI79346.1
Hypothetical protein.
       0.832
AJI79882.1
PFAM: Glycosyl hydrolase family 76.
  
     0.732
AJI80039.1
Putative integral membrane protein; PFAM: Protein of unknown function (DUF2029).
  
     0.705
AJI79879.1
Hypothetical protein.
  
     0.688
AJI79671.1
Glucitol operon activator.
  
     0.684
AJI80112.1
Hypothetical protein.
  
     0.680
AJI78319.1
Hypothetical protein.
  
     0.677
AJI80041.1
Hypothetical protein.
  
     0.676
AJI80011.1
Hypothetical protein.
  
     0.672
Your Current Organism:
Corynebacterium singulare
NCBI taxonomy Id: 161899
Other names: C. singulare, CCUG 37330, CIP 105491, DSM 44357, IBS B52218, IFO 16162, JCM 10385, NBRC 16162
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