Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
AJI79367.1PFAM: Protein of unknown function (DUF3043). (252 aa)    
Predicted Functional Partners:
cobT
PFAM: Phosphoribosyltransferase.
       0.813
AJI79105.1
PFAM: Domain of unknown function (DUF4193).
  
     0.737
rbpA
Protein of unknown function (DUF4109); Binds to RNA polymerase (RNAP), stimulating transcription from principal, but not alternative sigma factor promoters. Belongs to the RNA polymerase-binding protein RbpA family.
  
     0.736
AJI79381.1
PFAM: Domain of unknown function (DUF4191).
 
     0.685
AJI78331.1
Putative hydrolase; PFAM: Uncharacterised conserved protein (DUF2342); TIGRFAM: putative hydrolase.
  
     0.674
AJI79366.1
PFAM: Iron-sulphur cluster biosynthesis; TIGRFAM: Iron-sulfur cluster assembly accessory protein; Belongs to the HesB/IscA family.
       0.672
AJI77922.1
Fructose-2,6-bisphosphatase; PFAM: Histidine phosphatase superfamily (branch 1).
  
     0.654
ccsB
ResB protein required for cytochrome c biosynthesis; PFAM: ResB-like family.
  
     0.654
AJI79322.1
Putative integral membrane protein; PFAM: YGGT family.
  
     0.646
AJI78960.1
PFAM: MerR HTH family regulatory protein.
  
     0.633
Your Current Organism:
Corynebacterium singulare
NCBI taxonomy Id: 161899
Other names: C. singulare, CCUG 37330, CIP 105491, DSM 44357, IBS B52218, IFO 16162, JCM 10385, NBRC 16162
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