Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AJI79429.1Zn-ribbon protein, possibly nucleic acid-binding; PFAM: Putative zinc ribbon domain. (238 aa)    
Predicted Functional Partners:
AJI79430.1
PFAM: NIF3 (NGG1p interacting factor 3); TIGRFAM: dinuclear metal center protein, YbgI/SA1388 family.
  
  
 0.944
rnhA
Fructose-2,6-bisphosphatase; PFAM: Reverse transcriptase-like; Histidine phosphatase superfamily (branch 1).
 
  
 0.941
ptpA
Protein-tyrosine-phosphatase; PFAM: Low molecular weight phosphotyrosine protein phosphatase.
  
    0.676
AJI79432.1
Hypothetical protein; PFAM: SURF1 family.
       0.664
ctaF
Cytochrome c oxidase subunit IV; Part of cytochrome c oxidase, its function is unknown. Belongs to the cytochrome c oxidase bacterial subunit CtaF family.
  
     0.637
AJI77985.1
PFAM: Protein of unknown function (DUF3068).
  
     0.612
AJI80109.1
Putative transcriptional regulator; PFAM: Uncharacterized ACR, COG1678; Belongs to the UPF0301 (AlgH) family.
  
     0.576
AJI79945.1
Hypothetical protein.
  
     0.528
AJI77894.1
Hypothetical protein.
  
     0.525
AJI79942.1
PFAM: Domain of unknown function (DUF3367).
  
     0.505
Your Current Organism:
Corynebacterium singulare
NCBI taxonomy Id: 161899
Other names: C. singulare, CCUG 37330, CIP 105491, DSM 44357, IBS B52218, IFO 16162, JCM 10385, NBRC 16162
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