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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AJI79479.1PFAM: Glycosyltransferase Family 4. (359 aa)    
Predicted Functional Partners:
AJI79481.1
PFAM: Glycosyl transferase family 2.
  
    0.795
AJI79480.1
Hypothetical protein.
       0.780
AJI79482.1
Hypothetical protein.
       0.773
galE1
PFAM: NAD dependent epimerase/dehydratase family.
  
    0.591
AJI79484.1
Glycosyltransferase; PFAM: Glycosyl transferases group 1; Glycosyl transferase 4-like domain.
       0.547
AJI79485.1
Hypothetical protein.
       0.547
rmlD
dTDP-4-dehydrorhamnose reductase; Catalyzes the reduction of dTDP-6-deoxy-L-lyxo-4-hexulose to yield dTDP-L-rhamnose.
  
  
 0.538
AJI79486.1
ABC-type polysaccharide/polyol phosphate transport system, ATPase component; PFAM: ABC transporter.
  
 
 0.508
AJI78720.1
PFAM: Alpha amylase, C-terminal all-beta domain.
   
 0.477
glgB
Alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase; Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position; Belongs to the glycosyl hydrolase 13 family. GlgB subfamily.
   
 0.477
Your Current Organism:
Corynebacterium singulare
NCBI taxonomy Id: 161899
Other names: C. singulare, CCUG 37330, CIP 105491, DSM 44357, IBS B52218, IFO 16162, JCM 10385, NBRC 16162
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