Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
AJI79535.1PFAM: Bacterial regulatory proteins, gntR family; UTRA domain. (251 aa)    
Predicted Functional Partners:
AJI79536.1
ABC-type dipeptide transport system, periplasmic component; PFAM: Bacterial extracellular solute-binding proteins, family 5 Middle.
       0.793
AJI79538.1
ABC-type dipeptide/oligopeptide/nickel transport system, permease component; PFAM: Binding-protein-dependent transport system inner membrane component.
  
    0.787
AJI79540.1
PFAM: Fusaric acid resistance protein-like.
       0.786
oppB2
ABC-type dipeptide/oligopeptide/nickel transport system, permease component; PFAM: Binding-protein-dependent transport system inner membrane component.
       0.782
AJI79539.1
ATPase component of various ABC-type transport systems with duplicated ATPase domain; PFAM: ABC transporter.
       0.780
brnQ
Branched-chain amino acid uptake carrier; Component of the transport system for branched-chain amino acids.
       0.584
yvbT
PFAM: Luciferase-like monooxygenase; TIGRFAM: luciferase family oxidoreductase, group 1.
       0.584
scrA
PTS system sucrose-specific IIC component; PFAM: Phosphotransferase system, EIIC; phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1; phosphotransferase system, EIIB; TIGRFAM: PTS system, sucrose-specific IIBC component; PTS system, glucose-like IIB component; PTS system, glucose subfamily, IIA component; Glc family (TC 4.A.1.2.12);PTS system sucrose-specific IIA component, Glc family (TC 4.A.1.2.12);PTS system sucrose-specific IIB component, Glc family (TC 4.A.1.2.12).
 
  
 0.573
metC
Cystathionine beta-lyase; PFAM: Aminotransferase class I and II.
       0.553
ptsG
PTS system IIA component; PFAM: Phosphotransferase system, EIIC; phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1; phosphotransferase system, EIIB; TIGRFAM: PTS system, glucose subfamily, IIA component; Glc family (TC 4.A.1).
 
  
 0.551
Your Current Organism:
Corynebacterium singulare
NCBI taxonomy Id: 161899
Other names: C. singulare, CCUG 37330, CIP 105491, DSM 44357, IBS B52218, IFO 16162, JCM 10385, NBRC 16162
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