Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
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[Homology]
Score
AJI79570.1PFAM: Helix-hairpin-helix motif; SLBB domain; TIGRFAM: competence protein ComEA helix-hairpin-helix repeat region; comEA protein. (208 aa)    
Predicted Functional Partners:
AJI79569.1
PFAM: Competence protein; TIGRFAM: ComEC/Rec2-related protein.
  
  
 0.878
holA
PFAM: DNA polymerase III, delta subunit; TIGRFAM: DNA polymerase III, delta subunit.
       0.832
argO
Putative threonine efflux protein; PFAM: LysE type translocator.
       0.824
AJI79567.1
PFAM: Ankyrin repeats (3 copies).
       0.824
AJI79571.1
PFAM: Uncharacterised protein, DegV family COG1307; TIGRFAM: EDD domain protein, DegV family.
       0.678
gpgP
Fructose-2,6-bisphosphatase; PFAM: Histidine phosphatase superfamily (branch 1); Belongs to the phosphoglycerate mutase family.
       0.678
rsfS
Ribosome silencing factor RsfS/YbeB/iojap; Functions as a ribosomal silencing factor. Interacts with ribosomal protein L14 (rplN), blocking formation of intersubunit bridge B8. Prevents association of the 30S and 50S ribosomal subunits and the formation of functional ribosomes, thus repressing translation.
       0.678
AJI79047.1
PFAM: Type IV leader peptidase family.
   
  
 0.647
nadD
Nicotinate-nucleotide adenylyltransferase; Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD).
       0.562
AJI77750.1
PFAM: Sodium/hydrogen exchanger family; TIGRFAM: Na+/H+ antiporter, bacterial form; TC 2.A.36.
      
 0.513
Your Current Organism:
Corynebacterium singulare
NCBI taxonomy Id: 161899
Other names: C. singulare, CCUG 37330, CIP 105491, DSM 44357, IBS B52218, IFO 16162, JCM 10385, NBRC 16162
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