Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AJI79794.1Hypothetical protein. (247 aa)    
Predicted Functional Partners:
bca
PFAM: Carbonic anhydrase.
       0.670
AJI79424.1
Hypothetical protein; PFAM: CYTH domain; CHAD domain.
  
     0.587
AJI78285.1
PFAM: Protein of unknown function (DUF3499).
   
    0.583
mutY
A/G-specific DNA-adenine glycosylase; PFAM: HhH-GPD superfamily base excision DNA repair protein; Helix-hairpin-helix motif; TIGRFAM: A/G-specific adenine glycosylase.
       0.577
AJI78733.1
PFAM: Methyltransferase domain.
  
     0.507
AJI78307.1
PFAM: Haloacid dehalogenase-like hydrolase; TIGRFAM: haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED.
  
     0.462
AJI78308.1
Hypothetical protein.
  
     0.438
AJI80039.1
Putative integral membrane protein; PFAM: Protein of unknown function (DUF2029).
  
     0.433
AJI77823.1
PFAM: Type II secretion system (T2SS), protein F.
  
     0.427
lpqB
Sporulation/spore germination protein; PFAM: Lipoprotein LpqB beta-propeller domain; Sporulation and spore germination.
  
     0.410
Your Current Organism:
Corynebacterium singulare
NCBI taxonomy Id: 161899
Other names: C. singulare, CCUG 37330, CIP 105491, DSM 44357, IBS B52218, IFO 16162, JCM 10385, NBRC 16162
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