Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AJI79865.1Hypothetical protein. (474 aa)    
Predicted Functional Partners:
pknG
PFAM: Protein kinase domain.
 
  
 0.980
glnH
Amino acid ABC transporter substrate-binding protein, PAAT family; PFAM: Bacterial extracellular solute-binding proteins, family 3.
 
  
 0.975
AJI79862.1
PFAM: ABC-2 family transporter protein.
 
     0.752
AJI79752.1
Putative deacetylase.
  
     0.750
AJI80112.1
Hypothetical protein.
  
     0.737
AJI80011.1
Hypothetical protein.
  
     0.736
AJI78054.1
PFAM: Protein of unknown function (DUF690); TIGRFAM: type VII secretion protein EccB, Actinobacterial.
  
    0.724
AJI78477.1
Hypothetical protein.
  
     0.723
AJI78763.1
Putative membrane protein; PFAM: DoxX.
  
    0.720
AJI79885.1
Hypothetical protein.
 
     0.719
Your Current Organism:
Corynebacterium singulare
NCBI taxonomy Id: 161899
Other names: C. singulare, CCUG 37330, CIP 105491, DSM 44357, IBS B52218, IFO 16162, JCM 10385, NBRC 16162
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