Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AJI79903.1PFAM: LGFP repeat. (267 aa)    
Predicted Functional Partners:
AJI77668.1
Putative membrane protein; PFAM: GtrA-like protein.
 
     0.713
AJI77669.1
Putative membrane protein; PFAM: GtrA-like protein.
 
     0.683
AJI79902.1
Hypothetical protein.
       0.682
pks13
Mycolic acid condensase; PFAM: Thioesterase domain; Acyl transferase domain; Phosphopantetheine attachment site; Beta-ketoacyl synthase, N-terminal domain; Beta-ketoacyl synthase, C-terminal domain.
     
 0.578
AJI79901.1
Hypothetical protein.
       0.562
AJI79900.1
Hypothetical protein.
       0.558
AJI79963.1
Decaprenyl-phosphate phosphoribosyltransferase; PFAM: UbiA prenyltransferase family; Belongs to the UbiA prenyltransferase family.
 
     0.536
AJI78056.1
TIGRFAM: type VII secretion integral membrane protein EccD.
   
    0.499
dprE1
decaprenylphospho-beta-D-ribofuranose 2-oxidase; PFAM: D-arabinono-1,4-lactone oxidase; FAD binding domain.
  
     0.491
lpqB
Sporulation/spore germination protein; PFAM: Lipoprotein LpqB beta-propeller domain; Sporulation and spore germination.
  
    0.483
Your Current Organism:
Corynebacterium singulare
NCBI taxonomy Id: 161899
Other names: C. singulare, CCUG 37330, CIP 105491, DSM 44357, IBS B52218, IFO 16162, JCM 10385, NBRC 16162
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