Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
AJI79907.1PFAM: LppP/LprE lipoprotein. (166 aa)    
Predicted Functional Partners:
AJI79908.1
PFAM: LppP/LprE lipoprotein.
      
0.613
AJI79906.1
PFAM: Phosphorylase superfamily; TIGRFAM: 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase, putative.
       0.540
ppiA
Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.
    
  0.506
ppiB
PFAM: Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD.
    
  0.506
AJI78253.1
PFAM: Universal stress protein family.
  
     0.496
AJI78269.1
PFAM: Universal stress protein family.
  
     0.493
AJI78252.1
Amino acid/polyamine/organocation transporter, APC superfamily; PFAM: Amino acid permease; TC 2.A.3.
  
     0.484
AJI78268.1
Amino acid/polyamine/organocation transporter, APC superfamily; PFAM: Amino acid permease; TC 2.A.3.
  
     0.476
thiF
Dinucleotide-utilizing enzyme possibly involved in molybdopterin or thiamin biosynthesis; PFAM: MoeZ/MoeB domain; ThiF family.
  
 
 0.452
AJI79457.1
PFAM: CRISPR-associated protein Cse2 (CRISPR_cse2); TIGRFAM: CRISPR type I-E/ECOLI-associated protein CasB/Cse2.
  
     0.445
Your Current Organism:
Corynebacterium singulare
NCBI taxonomy Id: 161899
Other names: C. singulare, CCUG 37330, CIP 105491, DSM 44357, IBS B52218, IFO 16162, JCM 10385, NBRC 16162
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