STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AJI79932.1PFAM: Sortase family; TIGRFAM: LPXTG-site transpeptidase (sortase) family protein. (311 aa)    
Predicted Functional Partners:
AJI78228.1
Putative collagen-binding protein; PFAM: Cna protein B-type domain; TIGRFAM: LPXTG-motif cell wall anchor domain.
 
   
 0.782
AJI79936.1
Fimbrial isopeptide formation D2 domain; PFAM: Cna protein B-type domain; TIGRFAM: LPXTG-motif cell wall anchor domain; fimbrial isopeptide formation D2 domain.
 
   
 0.776
AJI78230.1
TIGRFAM: fimbrial isopeptide formation D2 domain.
 
     0.693
AJI79933.1
Hypothetical protein; TIGRFAM: LPXTG-motif cell wall anchor domain.
 
   
 0.512
Your Current Organism:
Corynebacterium singulare
NCBI taxonomy Id: 161899
Other names: C. singulare, CCUG 37330, CIP 105491, DSM 44357, IBS B52218, IFO 16162, JCM 10385, NBRC 16162
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.