Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AJI80055.1PFAM: FtsX-like permease family. (331 aa)    
Predicted Functional Partners:
AJI80054.1
ABC-type antimicrobial peptide transport system, ATPase component; PFAM: ABC transporter.
 
  0.997
chrS
PFAM: Histidine kinase; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.
 
     0.780
chrA
Two component transcriptional regulator, LuxR family; PFAM: Response regulator receiver domain; Bacterial regulatory proteins, luxR family.
 
     0.742
AJI80053.1
PFAM: Integral membrane protein (intg_mem_TP0381); TIGRFAM: conserved hypothetical integral membrane protein TIGR02206.
       0.636
AJI80058.1
PFAM: Pyridine nucleotide-disulphide oxidoreductase.
       0.586
AJI77919.1
ABC-type antimicrobial peptide transport system, ATPase component; PFAM: ABC transporter.
  
   0.585
AJI78445.1
ABC-type antimicrobial peptide transport system, ATPase component; PFAM: ABC transporter.
  
   0.585
AJI78967.1
ABC-type antimicrobial peptide transport system, ATPase component; PFAM: ABC transporter.
  
   0.585
AJI79703.1
ABC-type antimicrobial peptide transport system, ATPase component; PFAM: ABC transporter.
  
   0.585
lolD
ABC-type antimicrobial peptide transport system, ATPase component; PFAM: ABC transporter.
  
   0.585
Your Current Organism:
Corynebacterium singulare
NCBI taxonomy Id: 161899
Other names: C. singulare, CCUG 37330, CIP 105491, DSM 44357, IBS B52218, IFO 16162, JCM 10385, NBRC 16162
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