Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
tnp3504jPFAM: Integrase core domain. (99 aa)    
Predicted Functional Partners:
AJI77706.1
PFAM: Transposase.
 
  
 0.784
AJI77883.1
PFAM: Transposase.
 
  
 0.783
AJI80128.1
Hypothetical protein.
       0.636
parB
Chromosome segregation DNA-binding protein; PFAM: ParB-like nuclease domain; TIGRFAM: ParB/RepB/Spo0J family partition protein; Belongs to the ParB family.
       0.636
soj
Chromosome segregation ATPase; PFAM: CobQ/CobB/MinD/ParA nucleotide binding domain.
       0.636
rsmG
16S rRNA (guanine(527)-N(7))-methyltransferase RsmG; Specifically methylates the N7 position of a guanine in 16S rRNA; Belongs to the methyltransferase superfamily. RNA methyltransferase RsmG family.
       0.632
yidC
Preprotein translocase subunit YidC; PFAM: 60Kd inner membrane protein; TIGRFAM: membrane protein insertase, YidC/Oxa1 family, C-terminal domain.
       0.586
Your Current Organism:
Corynebacterium singulare
NCBI taxonomy Id: 161899
Other names: C. singulare, CCUG 37330, CIP 105491, DSM 44357, IBS B52218, IFO 16162, JCM 10385, NBRC 16162
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