Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| KKQ40721.1 | KKQ40812.1 | US58_C0013G0021 | US58_C0012G0021 | Excinuclease ABC C subunit domain protein; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision. | Polymerase III, alpha subunit protein. | 0.793 |
| KKQ40721.1 | KKQ40946.1 | US58_C0013G0021 | US58_C0009G0016 | Excinuclease ABC C subunit domain protein; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision. | Polymerase III, delta prime subunit protein. | 0.708 |
| KKQ40721.1 | KKQ41023.1 | US58_C0013G0021 | US58_C0006G0002 | Excinuclease ABC C subunit domain protein; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision. | Polymerase III subunit beta protein; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation [...] | 0.770 |
| KKQ40721.1 | KKQ41039.1 | US58_C0013G0021 | US58_C0006G0018 | Excinuclease ABC C subunit domain protein; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision. | Polymerase III protein. | 0.761 |
| KKQ40721.1 | dnaX | US58_C0013G0021 | US58_C0001G0006 | Excinuclease ABC C subunit domain protein; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision. | Polymerase III, subunit gamma and tau protein; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity. | 0.708 |
| KKQ40721.1 | ligA | US58_C0013G0021 | US58_C0001G0017 | Excinuclease ABC C subunit domain protein; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision. | Ligase protein; DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double- stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA. | 0.791 |
| KKQ40721.1 | topA | US58_C0013G0021 | US58_C0020G0012 | Excinuclease ABC C subunit domain protein; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision. | Topoisomerase protein; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA su [...] | 0.420 |
| KKQ40812.1 | KKQ40721.1 | US58_C0012G0021 | US58_C0013G0021 | Polymerase III, alpha subunit protein. | Excinuclease ABC C subunit domain protein; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision. | 0.793 |
| KKQ40812.1 | KKQ40946.1 | US58_C0012G0021 | US58_C0009G0016 | Polymerase III, alpha subunit protein. | Polymerase III, delta prime subunit protein. | 0.994 |
| KKQ40812.1 | KKQ41023.1 | US58_C0012G0021 | US58_C0006G0002 | Polymerase III, alpha subunit protein. | Polymerase III subunit beta protein; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation [...] | 0.999 |
| KKQ40812.1 | KKQ41039.1 | US58_C0012G0021 | US58_C0006G0018 | Polymerase III, alpha subunit protein. | Polymerase III protein. | 0.999 |
| KKQ40812.1 | dnaX | US58_C0012G0021 | US58_C0001G0006 | Polymerase III, alpha subunit protein. | Polymerase III, subunit gamma and tau protein; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity. | 0.993 |
| KKQ40812.1 | leuS | US58_C0012G0021 | US58_C0013G0035 | Polymerase III, alpha subunit protein. | Leucyl-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family. | 0.508 |
| KKQ40812.1 | ligA | US58_C0012G0021 | US58_C0001G0017 | Polymerase III, alpha subunit protein. | Ligase protein; DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double- stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA. | 0.814 |
| KKQ40812.1 | topA | US58_C0012G0021 | US58_C0020G0012 | Polymerase III, alpha subunit protein. | Topoisomerase protein; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA su [...] | 0.584 |
| KKQ40946.1 | KKQ40721.1 | US58_C0009G0016 | US58_C0013G0021 | Polymerase III, delta prime subunit protein. | Excinuclease ABC C subunit domain protein; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision. | 0.708 |
| KKQ40946.1 | KKQ40812.1 | US58_C0009G0016 | US58_C0012G0021 | Polymerase III, delta prime subunit protein. | Polymerase III, alpha subunit protein. | 0.994 |
| KKQ40946.1 | KKQ41023.1 | US58_C0009G0016 | US58_C0006G0002 | Polymerase III, delta prime subunit protein. | Polymerase III subunit beta protein; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation [...] | 0.993 |
| KKQ40946.1 | KKQ41039.1 | US58_C0009G0016 | US58_C0006G0018 | Polymerase III, delta prime subunit protein. | Polymerase III protein. | 0.994 |
| KKQ40946.1 | leuS | US58_C0009G0016 | US58_C0013G0035 | Polymerase III, delta prime subunit protein. | Leucyl-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family. | 0.546 |
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